miRBase entry: mtr-MIR2666

Stem-loop mtr-MIR2666


Accession
MI0012020
Description
Medicago truncatula mtr-MIR2666 precursor miRNA


Sequence

uugaccuuuuguuuauauuaaguuccuuuguauuuucuuucuuuucuucuaaagugccccaguucugcauaaauauucuugugcgugugaaagaaucauucccuguuugcuuaauaugugacauauaguugauaucuuaagcuuuuauuuuaaaucuccgauuucuugccauguuguuaauguacuauaugauaauugcaccuauaauuuguuucugaauaagcuacuggacaacauuuccugauucuuugcaaguuuuuggaaacaauucaacuuccacauacacauauacaauuauacuucucuuacucaaauuuaccauuuacuuuuggcacauacgcaaacguaaauaugcauuuuucauugguuuauuuuuuucauaggaaCGAAAGUGAGGAUAUCAAGGAuauuguugaaaaaguuac
.((((.((((.....((.(((..(((((.((((((((((((.(((((...((((((..(((((..((((((..(((..(((((.((((((((((((((..........((((((.(((((((.....))).)))).)))))).........(((((...)))))......((((((((...(((((.(((.......(((.........)))......))))).)))..))))))))....)))))))))....((...(((((..........)))))...))..................................(((........)))))))).)))))..)))..))))))......)))))..))))))......))))).))))..)))))))).)))))..))).)))))).)))).

Structure
u    c    guuua  u   gu     u        --    u     ---ucu      cc     ----uc      aa   uc     c     ----------------------------------------------------------------------------------         uucccuguuugcuuaauaugugacauauaguugauaucuuaagcuuuuauuuuaaaucuccgauuucuugcc        aau   -  a   gauaauu   ccu 
 ugac uuuu     ua uaa  uccuu guauuuuc  uuuc uuucu      aaagug  ccagu      ugcaua  uau  uugug gugug                                                                                  aaagaauca                                                                        auguuguu   gua cu uau       gca   a
 |||| ||||     || |||  ||||| ||||||||  |||| |||||      ||||||  |||||      ||||||  |||  ||||| |||||                                                                                  |||||||||                                                                        ||||||||   ||| || |||       |||   u
 auug aaaa     gu guu  AGGAA UAUAGGAG  AAAG aagga      uuuuau  gguua      acguau  aug  aacgc uacac                                                                                  uuucuuagu                                                                        uacaacag   cau ga aua       ugu   a
c    a    -----  u   au     C        UG    C     uacuuu      uu     cuuuuu      aa   ca     a     gguuuucauuuaccauuuaaacucauucucuucauauuaacauauacacauacaccuucaacuuaacaaagguuuuugaacg         --------------------------------------------------------------------ccuu        -gu   c  -   -agucuu   uua 


Annotation confidence Not enough data
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Genome context
chr4: 3266952-3267376 [-]

Database links

Mature mtr-miR2666

Accession MIMAT0013473
Description Medicago truncatula mtr-miR2666 mature miRNA
Sequence 387 - CGAAAGUGAGGAUAUCAAGGA - 407
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796