Stem-loop sequence mtr-MIR2670a

Accession

MI0012025 (change log)

Description

Medicago truncatula miR2670a stem-loop

Gene family

MIPF0000855; MIR2670

Stem-loop

   -agugaucaaacuuuuuugggguaaaauagugaguagccgauuuggugaagug       auucuga              -        ---      -u    ---           
5'                                                      aucaacc       uaaguuuaaaucug uuuuuuuu   uacucc  gaaa   cuuuuuacca 
                                                        |||||||       |||||||||||||| ||||||||   ||||||  ||||   ||||||||| u
3'                                                      uaguugg       auuuaaauuuagac aaaaaaaa   augggg  cuuu   ggaaaauggg 
   cacuuuaguagaaccccauuuuaucacucguuggaagaacuccuuuuauggag       gaacccg              c        aau      uu    uua           

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr2: 24709014-24709241 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0012025

Mature sequence mtr-miR2670a

• Accession: MIMAT0013478
• Sequence: 189 - caagaagguugcucacuauuu - 209
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).