Stem-loop mtr-MIR2670c

Accession

MI0012027

Description

Medicago truncatula mtr-MIR2670c precursor miRNA

Gene family

MIPF0000855; MIR2670

Sequence

ugaucauacuucuucggggcaaauagugaguagccgauuuggggaagugaucaaccccuaggauaaguuuaaauuuguuuuuuuuaccccagagacuuuuuaccguggcuaaaaagaucuucuuggggguauaaaaagaaccauauuuaaauuuagcccaaggguugaugauguauuuuccuCAAGAAGGUUGCUCACUAUUUuaccccaagaaagcugguc
.(((((...(((((.((((.(((((((((((((((..(((((((((((.((((((((...((.(((((((((((..((((((((((((((((((((((((((.......))))))).))))..)))))...))))))))))...))))))))))).))...)))))))).)).....)))))))))..)))))))))))))))..)))))))))...)))))

Structure

u     uac     c    -c               ga         -----  g        cua  a           -uu          ---     --    -       cc 
 gauca   uucuu gggg  aaauagugaguagcc  uuuggggaa     gu aucaaccc   gg uaaguuuaaau   guuuuuuuua   cccca  gaga cuuuuua  g
 |||||   ||||| ||||  |||||||||||||||  |||||||||     || ||||||||   || |||||||||||   ||||||||||   |||||  |||| |||||||  u
 cuggu   aagaa cccc  UUUAUCACUCGUUGG  GAACuccuu     ua uaguuggg   cc auuuaaauuua   caagaaaaau   ggggu  uucu gaaaaau  g
-     cga     -    au               AA         uuaug  g        aac  g           uac          aug     uc    a       cg 

Annotation confidence Not enough data

Genome context

chr5: 10276042-10276263 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2670c

Mature mtr-miR2670c

• Accession: MIMAT0013480
• Description: Medicago truncatula mtr-miR2670c mature miRNA
• Sequence: 183 - CAAGAAGGUUGCUCACUAUUU - 203
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796