Stem-loop sequence mtr-MIR2671a

Accession

MI0012030 (change log)

Description

Medicago truncatula miR2671a stem-loop

Gene family

MIPF0000813; MIR2655

Stem-loop

   -       -   u                   c    c      a                   a                                                          ca                         -guu        a   c   acucuaauac 
5'  uucguuu ggu ccuuaacuauuaaaaguuu guuu gguccc uaauuuauuuuuugguuuc uuuuggucccuuaacuauuaaaaguuucguuuugguccuuuaacuuacuuuuugguuu  uuuuggucccuuaacuuauuuuuug    ucauuuug ucc uua          a
    ||||||| ||| ||||||||||||||||||| |||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    |||||||| ||| |||          u
3'  aagcaaa cca ggaauugauaauuuucaaa caaa ccaggg auugaaugaaaaaccaaag aaaaccagggaauugauaauuuucaaagcaaaaccaggaaauugaaugaaaaaccaaa  aaaaccagggaauugaguaggagac    ggugaaac agg aau          u
   a       a   u                   a    a      a                   c                                                          ac                         aguu        c   a   acaauccuac 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr4: 19714431-19714790 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0012030

Mature sequence mtr-miR2671a

• Accession: MIMAT0013483
• Sequence: 21 - uuaaaaguuucguuucggucc - 41
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).