Stem-loop sequence mtr-MIR2671b

Accession

MI0012031 (change log)

Description

Medicago truncatula miR2671b stem-loop

Gene family

MIPF0000813; MIR2655

Stem-loop

   -                                   c      a            g      c                                      c                                              -auu  a         c   acucuaauac 
5'  ucguuuuggucccuuaacuauuaaaaguuucguuu gguccc uaauuuauuuuu gguuuu uuuuggucccuuaacuauuaaaaguuucguuuuggucc uuaacuuauuuuuugguuucguuuuggucccuuaacuuauuuuuug    uc uuuuggucc uua          a
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    || ||||||||| |||          u
3'  agcaaaaccagggaauugauaauuuucaaagcaaa ccaggg auugaaugaaaa ccaaaa aaaaccggggaauugauaauuuucgaagcaaaaccagg aauugaaugaaaagccaaagcaaaaccagggaauugaguaggaggc    gg gaaaucagg aau          u
   a                                   a      a            a      c                                      c                                              aguu  g         a   acaauccuac 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr8: 22898470-22898828 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0012031

Mature sequence mtr-miR2671b

• Accession: MIMAT0013484
• Sequence: 21 - uuaaaaguuucguuucggucc - 41
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).