Stem-loop sequence mtr-MIR2671c

Accession

MI0012032 (change log)

Description

Medicago truncatula miR2671c stem-loop

Gene family

MIPF0000813; MIR2655

Stem-loop

   -        a                          c      a            g      c                                                                             a       -guu       a    c   acucuaauac 
5'  ucguuuug uuccuuaacuauuaaaaguuucguuu gguccc uaacuuauuuuu gguuuu uuuuggucccuuaacuauuaaaaguuuuguuuuggucuuuuaacuuacuuuuugguuucguuuuggucccuuaacuu uuuuuug    ucauuuu gucc uua          a
    |||||||| |||||||||||||||||||||||||| |||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    ||||||| |||| |||          u
3'  agcaaaac agggaauugauaauuuucaaagcaaa ccaggg auugaaugaaaa ccaaag aaaaccagggaauugauaauuuucaaagcaaaaccagaaaauugaaugaaaaaccaaagcaaaaccagggaauugag aggaagc    ggugaaa cagg aau          u
   a        c                          a      a            a      c                                                                             a       aguu       c    a   acaauccuac 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr5: 16668115-16668473 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mtr-MIR2671c

• mtr-MIR395j: chr5: 16671143-16671218 [-]
• mtr-MIR2671c: chr5: 16668115-16668473 [-]

Database links

• miRBase Tracker:MI0012032

Mature sequence mtr-miR2671c

• Accession: MIMAT0013485
• Sequence: 21 - uuaaaaguuucguuucggucc - 41
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).