Stem-loop mtr-MIR2671c

Accession

MI0012032

Description

Medicago truncatula mtr-MIR2671c precursor miRNA

Gene family

MIPF0000813; MIR2655

Sequence

ucguuuugauuccuuaacuaUUAAAAGUUUCGUUUCGGUCCcauaacuuauuuuuggguuuucuuuuggucccuuaacuauuaaaaguuuuguuuuggucuuuuaacuuacuuuuugguuucguuuuggucccuuaacuuauuuuuugguuucauuuuagucccuuaacucuaauacauucauccuaacauaaaggaccaaagugguugacgaaggaagaguuaagggaccaaaacgaaaccaaaaaguaaguuaaaagaccaaaacgaaacuuuuaauaguuaagggaccaaaacgaaaccaaaaaguaaguuaagggaccaaaacgaaacuuuuaauaguuaagggaccaaaacgaa
((((((((.((((((((((((((((((((((((((.((((((.((((((((((((.((((((.(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.(((((((...(((((((.((((.(((.......................))).)))).)))))))....))))))).))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).)))))).)))))))))))).)))))).)))))))))))))))))))))))))).)))))))).

Structure

-        a                          C      a            g      c                                                                             a       -guu       a    c   acucuaauac 
 ucguuuug uuccuuaacuaUUAAAAGUUUCGUUU GGUCCc uaacuuauuuuu gguuuu uuuuggucccuuaacuauuaaaaguuuuguuuuggucuuuuaacuuacuuuuugguuucguuuuggucccuuaacuu uuuuuug    ucauuuu gucc uua          a
 |||||||| |||||||||||||||||||||||||| |||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    ||||||| |||| |||          u
 agcaaaac agggaauugauaauuuucaaagcaaa ccaggg auugaaugaaaa ccaaag aaaaccagggaauugauaauuuucaaagcaaaaccagaaaauugaaugaaaaaccaaagcaaaaccagggaauugag aggaagc    ggugaaa cagg aau          u
a        c                          a      a            a      c                                                                             a       aguu       c    a   acaauccuac 

Annotation confidence Not enough data

Genome context

chr5: 16668115-16668473 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2671c

Mature mtr-miR2671c

• Accession: MIMAT0013485
• Description: Medicago truncatula mtr-miR2671c mature miRNA
• Sequence: 21 - UUAAAAGUUUCGUUUCGGUCC - 41
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796