miRBase entry: mtr-MIR2671d

Stem-loop mtr-MIR2671d


Accession
MI0012033
Description
Medicago truncatula mtr-MIR2671d precursor miRNA
Gene family
MIPF0000813; MIR2655


Sequence

ucguuuugguuccuuaacuaUUAAAAGUUUCGUUUCGGUCCcauaacuuauuuuuggguuuucuuuuggucccuuaacuauuaaaaguuucguuuuggucccuuaacuuauuuuuugguuucguuuuggucccuuaacuuauuuuuuuuguuucauuuuggucccuuaacucuaauacauucauccuaacauaaaggaccaaagaggcugacgaaggaagaguuaagggaccaaaaugaaaccaaaaaguaaguuaaaggaccaaaaagaaacuuuuaauaguuaagggaccaaaaugaaaccaaaaaguaaguuaagggaccaaaacaaaacuuuuaauaguuaagggaccaaaacgaa
((((((((((((((((((((((((((((((.((((.((((((.((((((((((((.((((((.((((((((((((((((((((((((((((.(((((((((.((((((((((((((((((((((((((((((((((((((..((((((((((((.(((((((((.(((.......................))).))))))))).))..)))))))))))))))))))))))))))))))))))))))))))))))).))))))))).)))))))))))))))))))))))))))).)))))).)))))))))))).)))))).)))).)))))))))))))))))))))))))))))).

Structure
-                              C    C      a            g      c                            g         c                                      au          --  a         c   acucuaauac 
 ucguuuugguuccuuaacuaUUAAAAGUUU GUUU GGUCCc uaacuuauuuuu gguuuu uuuuggucccuuaacuauuaaaaguuuc uuuuggucc uuaacuuauuuuuugguuucguuuuggucccuuaacuu  uuuuuuuguu  uc uuuuggucc uua          a
 |||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||  || ||||||||| |||          u
 agcaaaaccagggaauugauaauuuucaaa caaa ccaggg auugaaugaaaa ccaaag aaaaccagggaauugauaauuuucaaag aaaaccagg aauugaaugaaaaaccaaaguaaaaccagggaauugag  aaggaagcag  gg gaaaccagg aau          u
a                              a    a      a            a      u                            a         a                                      --          uc  a         a   acaauccuac 


Annotation confidence Not enough data
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Genome context
chr5: 22261365-22261724 [+]

Database links

Mature mtr-miR2671d

Accession MIMAT0013486
Description Medicago truncatula mtr-miR2671d mature miRNA
Sequence 21 - UUAAAAGUUUCGUUUCGGUCC - 41
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796