Stem-loop mtr-MIR2671g

Accession

MI0012036

Description

Medicago truncatula mtr-MIR2671g precursor miRNA

Gene family

MIPF0000813; MIR2655

Sequence

ucguuuugguuccuuaacuaUUAAAAGUUUCGUUUCGGUCCcauaauuuauuuuugaguuuucuuuuggucccuuaacuauuaaaaguuucguuuuagucccuuaacuuauuuuuuugguuucguuuuggucccuuaacuuauuuuuugguuucauuuuggucccuuaacucuaauacauucauccuaacauaaaggaccaaaguaguugacggaggaagaguuaauggaccaaaacgaaaucaaaaaguaaguuaaaggaccaaaacgaaacuuuuaauaguuaagggaccaaaacgaaaccaaaaaguaaguuaagggaccaaaacgaaacuuuuaauaguuaagggaccaaaacgac
(((((((((((((((((((((((((((((((((((.((((((.((((((((((((..(((((.(((((((((((((((((((((((((((((((((.((((.((((((((((((((.((((((((((((((((.(((((((.((((((.(((.(((((((((((.(((.......................))).)))))))))).)..))).))))))))))))).)))))))))))))))))))))))))))))).)))).))))))))))))))))))))))))))))))))).)))))..)))))))))))).)))))).))))))))))))))))))))))))))))))))))).

Structure

-                                   C      a            ga     c                                 a    c              u                c       a      g   -u -          c   acucuaauac 
 ucguuuugguuccuuaacuaUUAAAAGUUUCGUUU GGUCCc uaauuuauuuuu  guuuu uuuuggucccuuaacuauuaaaaguuucguuuu gucc uuaacuuauuuuuu gguuucguuuuggucc uuaacuu uuuuuu guu  c auuuuggucc uua          a
 ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||  ||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||| ||||||| |||||| |||  | |||||||||| |||          u
 agcaaaaccagggaauugauaauuuucaaagcaaa ccaggg auugaaugaaaa  caaag aaaaccagggaauugauaauuuucaaagcaaaa cagg aauugaaugaaaaa cuaaagcaaaaccagg aauugag aaggag cag  g ugaaaccagg aau          u
c                                   a      a            ac     c                                 c    a              -                u       -      g   uu a          a   acaauccuac 

Annotation confidence Not enough data

Genome context

chr7: 7256648-7257007 [+]

Mature mtr-miR2671g

• Accession: MIMAT0013489
• Description: Medicago truncatula mtr-miR2671g mature miRNA
• Sequence: 21 - UUAAAAGUUUCGUUUCGGUCC - 41
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796