Stem-loop sequence mtr-MIR2671h

Accession

MI0012037 (change log)

Description

Medicago truncatula miR2671h stem-loop

Gene family

MIPF0000813; MIR2655

Stem-loop

   ucguuuugguuccuuaacuauuaaaaguuucguuucggucccauaacuuauuuuuugguuucauuuuggucccuuaacuauuaaaaguuuc                              c                          -guu            c   acucuaauac 
5'                                                                                            guuuugguccuuuaacuuacuuuuugguuu guuuuggucccuuaacuuauuuuuug    ucauuuuggucc uua          a
                                                                                              |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    |||||||||||| |||          u
3'                                                                                            caaaacuaggaaauugaaugaaaaaccaaa caaaaccagggaauugaguaggagac    ggugaaaccagg aau          u
   ----------------------------aagcaaaaccauggaauugauaauuuucaaagcaaaaccagggaauugaaugaaaaaccaaag                              a                          aguu            a   acaauccuac 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr4: 46468156-46468485 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0012037

Mature sequence mtr-miR2671h

• Accession: MIMAT0013490
• Sequence: 21 - uuaaaaguuucguuucggucc - 41
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).