miRBase entry: mtr-MIR2674

Stem-loop mtr-MIR2674


Accession
MI0012042
Description
Medicago truncatula mtr-MIR2674 precursor miRNA


Sequence

aauuagaagcucuggcuggaaaacacgaaugguuuaaucgcucaagucgaaucaucaucacaacucgggacaaaagguugcuaacaugucaugggauugaauguaaauaugaggugaagggguugaaugacauagaugcugcugaguugguuagaaggaaagcuuuuaaagaugaauuuaguccaagcuacaaaaauguuucaacagaaaaaaugcauguuuuagaacguguuguaacauaugccucuggucaucCACUCGCUUUGGAAGUCAUGGguucucacuuuucuaaua
.((((((((((((((((...(((..(((.(((.((((((.((((..(((......(((..(((((((.((((..((....))....)))).)))).))).)))......)))..)).)).))))))(((((.((((.((.((((((((.((((((((.....)))))...))).))))))))......(((((..((((((.((((...........))))...)))))).)))))......)).)))))))))))).))).)))...))))).))))........))))))).

Structure
a       --------    -     gga   ca   a   -------------------------------------------------------------------------------------------------------------------------------u      g  -  ag   aaucau   ca   -    g    --aa  g 
 auuagaa        gcuc uggcu   aaa  cga ugg                                                                                                                                uuaauc cu ca  ucg      cau  caa cucg gaca    ag u
 |||||||        |||| |||||   |||  ||| |||                                                                                                                                |||||| || ||  |||      |||  ||| |||| ||||    ||  
 uaaucuu        ugGG ACUGA   UUU  GCU ACc                                                                                                                                aguugg ga gu  agu      gua  guu gggu cugu    uc u
a       uucacucu    U     AGG   -C   C   uacuggucuccguauacaauguugugcaagauuuuguacguaaaaaagacaacuuuguaaaaacaucgaaccugauuuaaguagaaauuuucgaaaggaagauugguugagucgucguagauacagua      g  a  gg   auaaau   -a   a    a    acaa  g 


Annotation confidence Not enough data
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Genome context
chr6: 17900754-17901047 [-]

Database links

Mature mtr-miR2674

Accession MIMAT0013495
Description Medicago truncatula mtr-miR2674 mature miRNA
Sequence 256 - CACUCGCUUUGGAAGUCAUGG - 276
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796