miRBase entry: mtr-MIR2675

Stem-loop mtr-MIR2675


Accession
MI0012043
Description
Medicago truncatula mtr-MIR2675 precursor miRNA


Sequence

acuuucaugaauaugguuuuggucccuacaaaauauuuuguuuuuuaaaaaggucccugcaaaaauuuuuguuuuugaaaauaaaauuuugcaaggaccaaaaacaaauuuuuuuuuacaaggacuaaaaccaaaaCGAGGCAUAUUUGCAGGGAUUaaaaccauauuuuagc
........(((((((((((((((((((.((((((.(((((((((.......(((((.(((((((..((((((((....))))))))))))))).)))))......................((.......))))))))))).)).)))).)))))))))))))))))))....

Structure
acuuucau                   a    -  a         --------------------------uuaaaaa     c       au        u 
        gaauaugguuuuggucccu caaa au uuuuguuuu                                 ggucc ugcaaaa  uuuuguuu u
        ||||||||||||||||||| |||| || |||||||||                                 ||||| |||||||  ||||||||  
        uuuauaccaaaaUUAGGGA GUUU UA GGAGCaaaa                                 ccagg acguuuu  aaaauaaa g
----cgau                   C    A  C         ccaaaaucaggaacauuuuuuuuuaaacaaaaa     a       --        a 


Annotation confidence Not enough data
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Genome context
chr3: 35808536-35808708 [-]

Database links

Mature mtr-miR2675

Accession MIMAT0013496
Description Medicago truncatula mtr-miR2675 mature miRNA
Sequence 137 - CGAGGCAUAUUUGCAGGGAUU - 157
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796