miRBase entry: mtr-MIR2676f

Stem-loop mtr-MIR2676f


Accession
MI0012050
Description
Medicago truncatula mtr-MIR2676f precursor miRNA
Gene family
MIPF0000831; MIR2676


Sequence

uuuuuuauuacuucauccaaacaauaacauuuaagaaugaaaacaauugaauugaaucauuugaauucccuauaauucuaaauucuucaaaauuucucaauuaccucauccaaacacacucuaggaaaauguuuugagggaauucaaauauuuuggggugaauucCAUUGUUUGGAUAAUAAUUUGaag
..........(((((((((((((((...(((((.((((((...((((...))))..))))))(((((......)))))......(((((((((.....(((..(((((...(((((...((...))...))))))))))..))).....))))))))))))))...))))))))))........)))))

Structure
uuuuuuauua     --------          aac     agaaugaaaacaauugaauugaaucauuugaauucccuauaauucuaaauu         uucuc   ua     ucc     cac  u 
          cuuca        uccaaacaau   auuua                                                   cuucaaaau     aau  ccuca   aaaca   uc  
          |||||        ||||||||||   |||||                                                   |||||||||     |||  |||||   |||||   || a
          gaaGU        AGGUUUGUUA   uaagu                                                   gggguuuua     uua  ggagu   uuugu   ag  
----------     UUAAUAAU          Ccu     ---------------------------------------------------         uaaac   ag     ---     aaa  g 


Annotation confidence Not enough data
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Genome context
chr7: 31692186-31692374 [+]

Database links

Mature mtr-miR2676f

Accession MIMAT0013503
Description Medicago truncatula mtr-miR2676f mature miRNA
Sequence 166 - CAUUGUUUGGAUAAUAAUUUG - 186
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796