miRBase entry: mtr-MIR2679b

Stem-loop mtr-MIR2679b


Accession
MI0012055
Description
Medicago truncatula mtr-MIR2679b precursor miRNA
Gene family
MIPF0000892; MIR2679


Sequence

auggcgguccgaaacccauaCUUUUCACUUUCGAACGGGUGaguguacuaucacuuuggaagacgucuauauguuacucggcuuaccuuuuggagguucaauuguuacggcuccuccaa
.(((.((.(((.(((...........(((((((((.((((((((.......((...((((.....))))..)).......)))))))))))))))))......))).)))..)).))).

Structure
a   c  -u   a   ccauaCUUUUC         C        guacuau  cuu    a 
 ugg gg  ccg aac           ACUUUCGAA GGGUGagu       ca   ugga g
 ||| ||  ||| |||           ||||||||| ||||||||       ||   |||| a
 acc cc  ggc uug           uggagguuu uccauucg       gu   aucu c
a   u  uc   a   -----uuaacu         -        gcucauu  -au    g 


Annotation confidence Not enough data
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Genome context
chr4: 16967159-16967277 [-]

Database links

Mature mtr-miR2679b

Accession MIMAT0013508
Description Medicago truncatula mtr-miR2679b mature miRNA
Sequence 21 - CUUUUCACUUUCGAACGGGUG - 41
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796