miRBase entry: mtr-MIR2680b

Stem-loop mtr-MIR2680b


Accession
MI0012058
Description
Medicago truncatula mtr-MIR2680b precursor miRNA
Gene family
MIPF0000841; MIR2680


Sequence

auagggucuagaccuggcauaucuucauaggaccaugcaaaaauaucuggauauucccggaggaguuggaugaucuucuguuuaaccccuuccucuagaguggcaccaaucuugauuucucgcuuguuuUCCUCGGUACCUAUGUUGAUaagcucgaucucuucuugg
.(((((...(((.(.(((.((((..(((((((((.....((((((...((......))(((((.(((((((........))))))).))))).((.(((.((....)).))).)).........))))))....))).))))))..)))).))).).)))..))))).

Structure
a     ucu   c u   a    uu      -   augca      -------------------ucuggauauuccc     a       gau 
 uaggg   aga c ggc uauc  cauagg acc     aaaaua                                ggagg guuggau   c
 |||||   ||| | ||| ||||  |||||| |||     ||||||                                ||||| |||||||    
 guucu   ucu g ucg aUAG  GUAUCC UGG     Uuuugu                                cuucc caauuug   u
g     -uc   a c   a    UU      A   -CUCC      ucgcucuuuaguucuaaccacggugagaucuc     c       ucu 


Annotation confidence Not enough data
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Genome context
chr5: 28991511-28991678 [+]

Database links

Mature mtr-miR2680b

Accession MIMAT0013511
Description Medicago truncatula mtr-miR2680b mature miRNA
Sequence 130 - UCCUCGGUACCUAUGUUGAU - 149
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796