Stem-loop sequence mtr-MIR2680e

Accession

MI0012061 (change log)

Description

Medicago truncatula miR2680e stem-loop

Gene family

MIPF0000841; MIR2680

Stem-loop

   a     ucu   ccu   a    uu      -   augcaaaaauauccggauauucccggaggaguuggaugaucuucuguuu 
5'  uaggg   aga   ggc uauc  cauagg acc                                                 a
    |||||   |||   ||| ||||  |||||| |||                                                  
3'  guucu   ucu   ucg auag  guaucc ugg                                                 a
   g     -uc   aac   a    uu      a   cuccuuuuguucgcucuuuaguucuaaccacgaugagaucuccuucccc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr4: 22719484-22719651 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0012061

Mature sequence mtr-miR2680e

• Accession: MIMAT0013514
• Sequence: 130 - uccucgguaccuauguugau - 149
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).