Stem-loop sequence bmo-mir-2733b-1

Accession

MI0012190

Previous IDs

bmo-mir-2733b

Description

Bombyx mori miR-2733b-1 stem-loop

Gene family

MIPF0000766; mir-2733

Stem-loop

uc      a            a u      u    -u     
  ucucua uauagucaucac c cucagu gaua  gugu 
  |||||| |||||||||||| | |||||| ||||  ||| a
  agagau guguuaguagug g ggguca cuau  uaca 
-u      g            c u      -    cu     

Deep sequencing

1 reads, 1 experiments

Genome context

• Coordinates (SILKDB2.0): nscaf2176: 345409-345488 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bmo-mir-2733b-1

• bmo-mir-9d: nscaf2176: 353029-353113 [-]
• bmo-mir-2733c: nscaf2176: 352194-352275 [-]
• bmo-mir-2733g: nscaf2176: 346317-346428 [-]
• bmo-mir-2733a-1: nscaf2176: 346147-346230 [-]
• bmo-mir-2851-1: nscaf2176: 346140-346238 [+]
• bmo-mir-2733b-2: nscaf2176: 345690-345818 [-]
• bmo-mir-2733h: nscaf2176: 345532-345612 [-]
• bmo-mir-2733b-1: nscaf2176: 345409-345488 [-]
• bmo-mir-2733a-3: nscaf2176: 345068-345215 [-]
• bmo-mir-2851-2: nscaf2176: 345032-345130 [+]
• bmo-mir-2733a-2: nscaf2176: 344959-345075 [-]
• bmo-mir-2733f: nscaf2176: 344550-344667 [-]
• bmo-mir-2733i: nscaf2176: 343361-343468 [-]
• bmo-mir-2733e-1: nscaf2176: 341366-341463 [-]
• bmo-mir-2733e-2: nscaf2176: 341036-341134 [-]

Mature sequence bmo-miR-2733b

• Accession: MIMAT0013777
• Sequence: 50 - ucacugggugcgugaugauugu - 71
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; cloned [1], RT-PCR [1], Solexa [2]

References

1. PMID:19699294 "A discovery of novel microRNAs in the silkworm (Bombyx mori) genome" Yu X, Zhou Q, Cai Y, Luo Q, Lin H, Hu S, Yu J Genomics. 94:438-444(2009).
2. PMID:20089182 "Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development" Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R BMC Genomics. 11:52(2010).