miRBase entry: bmo-mir-9c

Stem-loop bmo-mir-9c


Accession
MI0012193
Description
Bombyx mori bmo-mir-9c precursor miRNA
Gene family
MIPF0000014; mir-9

Literature search
5 open access papers mention bmo-mir-9c
(18 sentences)

Sequence

21402 reads, 3998 reads per million, 3 experiments
cagcgcgccgagggucgcgggccgucUCUUUGGUAUCCUAGCUGuaggcgugcgcggcccUAAAGUUAUGGUACCGAAGUUAcggcucgugacguaucagucgacguc
..((((((.((..((((((((((((..((((((((((.(((((.((((.((.....)))))).))))).))))))))))..))))))))))))...)).).)).))).

Structure
ca   -  - c  -gg            cU          C     G    c  g 
  gcg cg c ga   gucgcgggccgu  CUUUGGUAUC UAGCU uagg gu c
  ||| || | ||   ||||||||||||  |||||||||| ||||| |||| || g
  ugc gc g cu   cagugcucggcA  GAAGCCAUGG AUUGA AUcc cg c
-c   a  u a  aug            UU          U     A    -  g 


Annotation confidence High
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Genome context
NW_004581774.1: 28981-29088 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from bmo-mir-9c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-9c-5p

Accession MIMAT0015302
Description Bombyx mori bmo-miR-9c-5p mature miRNA
Sequence 27 - UCUUUGGUAUCCUAGCUG - 44
Evidence experimental
Illumina [2]
Database links

Mature bmo-miR-9c-3p

Accession MIMAT0012621
Description Bombyx mori bmo-miR-9c-3p mature miRNA
Sequence 61 - UAAAGUUAUGGUACCGAAGUUA - 82
Evidence experimental
cloned [1], RT-PCR [1], Illumina [2]
Database links

References

  1. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148

  2. PubMed ID: 19699294
    A discovery of novel microRNAs in the silkworm (Bombyx mori) genome
    "Yu X, Zhou Q, Cai Y, Luo Q, Lin H, Hu S, Yu J"
    "Genomics (2009) 94:438-444