Stem-loop bmo-mir-306a

Accession

MI0012201

Description

Bombyx mori bmo-mir-306a precursor miRNA

Literature search

2 open access papers mention bmo-mir-306a
(23 sentences)

Sequence

271822 reads, 54987 reads per million, 3 experiments

ccgcgggagacggaggcgggcggccgccUCAGGUACUAGGUGACUCUGAguggugccggucuCAGAGCCGCCUCGUGCCUCAGcgcgggcuccgccgacacguccgcc
..(((((.(..(..((((((.(.((((((.((((((.(((((.(((((((..........))))))).))))).)))))).)).)))).)))))))..).).))))).

Structure

cc     a ac ga      c g    -  C      U     A       uggu 
  gcggg g  g  ggcggg g ccgc cU AGGUAC AGGUG CUCUGAg    g
  ||||| |  |  |||||| | |||| || |||||| ||||| |||||||     
  cgccu c  c  ccgccu c ggcg GA UCCGUG UCCGC GAGACuc    c
-c     g -a ag      - g    c  C      C     C       uggc 

Annotation confidence Medium

Genome context

NW_004581774.1: 30978-31085 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from bmo-mir-306a

Mature bmo-miR-306a-5p

• Accession: MIMAT0012629
• Description: Bombyx mori bmo-miR-306a-5p mature miRNA
• Sequence: 29 - UCAGGUACUAGGUGACUCUGA - 49
• Evidence: experimental ; cloned [1], RT-PCR [1], Illumina [2], SOLID [3]

Mature bmo-miR-306a-3p

• Accession: MIMAT0015303
• Description: Bombyx mori bmo-miR-306a-3p mature miRNA
• Sequence: 63 - CAGAGCCGCCUCGUGCCUCAG - 83
• Evidence: experimental ; Illumina [2], SOLID [3]

References

1. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148


2. PubMed ID: 19699294
   A discovery of novel microRNAs in the silkworm (Bombyx mori) genome
   "Yu X, Zhou Q, Cai Y, Luo Q, Lin H, Hu S, Yu J"
   "Genomics (2009) 94:438-444


3. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415