Stem-loop sequence bmo-mir-306a

Accession MI0012201
Previous IDs bmo-mir-306
Description Bombyx mori miR-306a stem-loop
Gene family MIPF0000313; mir-306
Stem-loop 
cc     agac ga      c g    -  c      u     a       --  g 
  gcggg    g  ggcggg g ccgc cu agguac aggug cucugag  ug u
  |||||    |  |||||| | |||| || |||||| ||||| |||||||  ||  
  cgccu    c  ccgccu c ggcg ga uccgug uccgc gagacuc  gc g
-c     -gca ag      - g    c  c      c     c       ug  c
Get sequence
Deep sequencing
280081 reads, 3 experiments
Genome context
Coordinates (SILKDB2.0) Overlapping transcripts
nscaf2839: 30888-30995 [+]
intergenic
Clustered miRNAs
< 10kb from bmo-mir-306a
bmo-mir-9c nscaf2839: 28891-28998 [+]
bmo-mir-306a nscaf2839: 30888-30995 [+]
bmo-mir-306b nscaf2839: 30904-30979 [-]
bmo-mir-79 nscaf2839: 31354-31453 [+]
bmo-mir-9b nscaf2839: 31358-31447 [-]

Mature sequence bmo-miR-306a-5p

Accession MIMAT0012629
Previous IDs bmo-miR-306;bmo-miR-306a
Sequence

29 -  

ucagguacuaggugacucuga

 - 49

Get sequence
Deep sequencing 279638 reads, 3 experiments
Evidence experimental; cloned [1], RT-PCR [1], Solexa [2], SOLID [3]

Mature sequence bmo-miR-306a-3p

Accession MIMAT0015303
Previous IDs bmo-miR-306**;bmo-miR-306a*
Sequence

63 -  

cagagccgccucgugccucag

 - 83

Get sequence
Deep sequencing 443 reads, 3 experiments
Evidence experimental; Solexa [2], SOLID [3]

References

1
PMID:19699294 "A discovery of novel microRNAs in the silkworm (Bombyx mori) genome" Yu X, Zhou Q, Cai Y, Luo Q, Lin H, Hu S, Yu J Genomics. 94:438-444(2009).
2
PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).
3
PMID:20229201 "Novel microRNAs in silkworm (Bombyx mori)" Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J Funct Integr Genomics. 10:405-415(2010).