miRBase entry: dpu-mir-283

Stem-loop dpu-mir-283

Accession

MI0012225

Description

Daphnia pulex dpu-mir-283 precursor miRNA

Gene family

MIPF0000054; mir-216

Literature search

1 open access papers mention dpu-mir-283
(7 sentences)

Sequence

cugcugauggcuucugauacggccAAAUAUCAGCAGGUAAUUCUgggcaguuauuauccuuggacuugauuaaaauacaaggaagaacccagacugccggcugguaucaggccgug
..(((...)))......(((((((..((((((((.((((..((((((......((.((((((...............)))))).)).)))))).)))).))))))))..)))))))

Structure

cugcugauggcuucuga       AA        A    AU      caguua  a      gacuug 
                 uacggcc  AUAUCAGC GGUA  UCUggg      uu uccuug      a
                 |||||||  |||||||| ||||  ||||||      || ||||||      u
                 gugccgg  uauggucg ccgu  agaccc      ag aggaac      u
-----------------       ac        g    -c      -----a  a      auaaaa

Annotation confidence Not enough data

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Genome context

GL732523.1: 1848721-1848836 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dpu-mir-283

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dpu-miR-283

Accession	MIMAT0012644
Description	Daphnia pulex dpu-miR-283 mature miRNA
Sequence	25 - AAAUAUCAGCAGGUAAUUCU - 44
Evidence	not_experimental

References

PubMed ID: 19196333
The deep evolution of metazoan microRNAs
"Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
"Evol Dev (2009) 11:50-68