miRBase entry: dpu-mir-2-2

Stem-loop dpu-mir-2-2

Accession

MI0012239

Description

Daphnia pulex dpu-mir-2-2 precursor miRNA

Gene family

MIPF0000049; mir-2

Literature search

1 open access papers mention dpu-mir-2-2
(6 sentences)

Sequence

caagggugucguguguauuagcuugucagagugguugugaugugcgucauguuguacucgUAUCACAGCCAGCUUUGAUGAGCgcuacgcucgacuuguug
(((.((.((((.(((((...((((((((((((((((((((((((((......)))))....)))))))))).)))))))))))..))))).)))))).)))

Structure

   g  u    u     uua           -          ----     uc 
caa gg gucg gugua   gcuugucagag ugguugugau    gugcg  a
||| || |||| |||||   ||||||||||| ||||||||||    |||||   
guu uu cagc cgcau   CGAGUAGUUUC ACCGACACUA    caugu  u
   g  -    u     -cg           G          Ugcu     ug

Annotation confidence Not enough data

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Genome context

GL732602.1: 241023-241123 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dpu-mir-2-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dpu-miR-2

Accession	MIMAT0012657
Description	Daphnia pulex dpu-miR-2 mature miRNA
Sequence	61 - UAUCACAGCCAGCUUUGAUGAGC - 83
Evidence	not_experimental

References

PubMed ID: 19196333
The deep evolution of metazoan microRNAs
"Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
"Evol Dev (2009) 11:50-68