Stem-loop dpu-mir-317

Accession

MI0012242

Description

Daphnia pulex dpu-mir-317 precursor miRNA

Gene family

MIPF0000144; mir-317

Literature search

1 open access papers mention dpu-mir-317
(1 sentences)

Sequence

aaauuuccacaccgggacggggaaccacccugcguucgccuguuguuggaauuuuccaggUGAACACAGCUGGUGGUAUCUCAGUccuugugauauuggaa
....((((((((.(((((.(((((((((((((.(((((((((..............))))))))).)))..)))))).)))).))))).)))....)))))

Structure

aaau     ----   c     g    -      --   c         uuguug 
    uucca    cac gggac ggga accacc  cug guucgccug      g
    |||||    ||| ||||| |||| ||||||  ||| |||||||||       
    aaggu    gug uccUG CUCU UGGUGG  GAC CAAGUggac      a
----     uaua   u     A    A      UC   A         cuuuua 

Annotation confidence Not enough data

Genome context

GL732526.1: 1243945-1244045 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dpu-mir-317

Mature dpu-miR-317

• Accession: MIMAT0012661
• Description: Daphnia pulex dpu-miR-317 mature miRNA
• Sequence: 61 - UGAACACAGCUGGUGGUAUCUCAGU - 85
• Evidence: not_experimental

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68