miRBase entry: dpu-mir-71

Stem-loop dpu-mir-71


Accession
MI0012248
Description
Daphnia pulex dpu-mir-71 precursor miRNA
Gene family
MIPF0000278; mir-71

Literature search
1 open access papers mention dpu-mir-71
(2 sentences)

Sequence

gcguugugaaaggcaucggccUGAAAGACAUGGGUAGUGAGAUGuuggccugguaguuccucaccucucacuacuuugucguucaugucgugcacuuuucc
.......((((((((.((((.((((.((((.(((((((((((....((...((.....))...))))))))))))))))).)))).))))))).)))))..

Structure
gcguugu     -   u    c    A    U           UGuu  ccu  u 
       gaaag gca cggc UGAA GACA GGGUAGUGAGA    gg   gg a
       ||||| ||| |||| |||| |||| |||||||||||    ||   || g
       uuuuc cgu gcug acuu cugu uucaucacucu    cc   cc u
-----cc     a   -    u    g    -           ----  acu  u 


Annotation confidence Not enough data
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Genome context
GL732602.1: 240409-240509 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dpu-mir-71
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dpu-miR-71

Accession MIMAT0012667
Description Daphnia pulex dpu-miR-71 mature miRNA
Sequence 22 - UGAAAGACAUGGGUAGUGAGAUG - 44
Evidence not_experimental

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68