Stem-loop dpu-mir-9

Accession

MI0012252

Description

Daphnia pulex dpu-mir-9 precursor miRNA

Gene family

MIPF0000014; mir-9

Literature search

2 open access papers mention dpu-mir-9
(9 sentences)

Sequence

ucgucauggcgcugcuuuuuUCUUUGGUUAUCUAGCUGUAUGAguguuagaagacgucAUAAAGCUAGGUUACCAAAGUUAagaacugccccucuucaucg
.......((.((.(.((((..(((((((.((((((((.(((((.((((....))))))))).)))))))).)))))))..)))).).)).)).........

Structure

--ucgucau  c  u c    uU       U        G     g    a 
         gg gc g uuuu  CUUUGGU AUCUAGCU UAUGA uguu g
         || || | ||||  ||||||| |||||||| ||||| ||||  
         cc cg c agaA  GAAACCA UGGAUCGA AUAcu gcag a
gcuacuucu  c  u a    UU       U        A     -    a 

Annotation confidence Not enough data

Genome context

GL732524.1: 1526193-1526293 [+]

Mature dpu-miR-9-5p

• Accession: MIMAT0012671
• Description: Daphnia pulex dpu-miR-9-5p mature miRNA
• Sequence: 21 - UCUUUGGUUAUCUAGCUGUAUGA - 43
• Evidence: not_experimental

Mature dpu-miR-79

• Accession: MIMAT0012668
• Description: Daphnia pulex dpu-miR-79 mature miRNA
• Sequence: 59 - AUAAAGCUAGGUUACCAAAGUUA - 81

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68