miRBase entry: isc-mir-2b

Stem-loop isc-mir-2b


Accession
MI0012277
Description
Ixodes scapularis isc-mir-2b precursor miRNA
Gene family
MIPF0000049; mir-2


Sequence

cuaauguuuuccugugcagccgucaaagggacugugaaaugucucccuucuuggucagcaUAUCACAGCCACCUUUGAUGAGCuguacacgaaucggacuc
.....((((((.((((((((((((((((((.((((((.((((...((.....))...)))).)))))).).))))))))).)))))))).)))...)))..

Structure
cuaau   ---   c        -         - a      a    cuc  u 
     guu   uuc ugugcagc cgucaaagg g cuguga augu   cc u
     |||   ||| |||||||| ||||||||| | |||||| ||||   || c
     cag   aag acauguCG GUAGUUUCC C GACACU Uacg   gg u
---cu   gcu   c        A         A C      A    acu  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
DS799611: 45547-45647 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from isc-mir-2b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature isc-miR-2b

Accession MIMAT0012697
Description Ixodes scapularis isc-miR-2b mature miRNA
Sequence 61 - UAUCACAGCCACCUUUGAUGAGC - 83
Evidence not_experimental

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68