miRBase entry: isc-mir-315

Stem-loop isc-mir-315


Accession
MI0012278
Description
Ixodes scapularis isc-mir-315 precursor miRNA
Gene family
MIPF0000141; mir-315

Literature search
1 open access papers mention isc-mir-315
(1 sentences)

Sequence

cugcgguacuccuucucagcUUUUGAUUGUUGCUCAGAAGGCguggcaaucugacaagccuucgagugacuaucaaaucuuguggagacgccaauucguca
....(((....((((.(((..((((((.(((((((.((((((.((.........)).))))))))))))).))))))..))).))))..))).........

Structure
-----cugc   acuc    u   cU      U       A      g  gca 
         ggu    cuuc cag  UUUGAU GUUGCUC GAAGGC ug   a
         |||    |||| |||  |||||| ||||||| |||||| ||   u
         ccg    gagg guu  aaacua cagugag cuuccg ac   c
acugcuuaa   --ca    u   cu      u       -      a  agu 


Annotation confidence Not enough data
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Genome context
DS711462: 57333-57433 [+]

Database links

Mature isc-miR-315

Accession MIMAT0012698
Description Ixodes scapularis isc-miR-315 mature miRNA
Sequence 21 - UUUUGAUUGUUGCUCAGAAGGC - 42
Evidence not_experimental

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68