Stem-loop isc-mir-71

Accession

MI0012283

Description

Ixodes scapularis isc-mir-71 precursor miRNA

Gene family

MIPF0000278; mir-71

Literature search

1 open access papers mention isc-mir-71
(4 sentences)

Sequence

gaguuugcaguguugauucccUGAAAGACAUGGGUAGUGAGAUGaguuugacugcauugccaucucacuaccuugucuuuguuggaaauagcacgugcagu
....(((((((((((.((((...(((((((.(((((((((((((.((.((....))..))))))))))))))))))))))...)))).)))))).))))).

Structure

gagu     -      a    cUG       U             a  -u  a 
    uugca guguug uucc   AAAGACA GGGUAGUGAGAUG gu  ug c
    ||||| |||||| ||||   ||||||| ||||||||||||| ||  ||  
    gacgu cacgau aagg   uuucugu uccaucacucuac cg  ac u
---u     g      a    uug       -             -  uu  g 

Annotation confidence Not enough data

Genome context

DS799611: 45689-45789 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from isc-mir-71

Mature isc-miR-71

• Accession: MIMAT0012703
• Description: Ixodes scapularis isc-miR-71 mature miRNA
• Sequence: 22 - UGAAAGACAUGGGUAGUGAGAUG - 44
• Evidence: not_experimental

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68