miRBase entry: isc-mir-79

Stem-loop isc-mir-79


Accession
MI0012285
Description
Ixodes scapularis isc-mir-79 precursor miRNA
Gene family
MIPF0000014; mir-9

Literature search
1 open access papers mention isc-mir-79
(7 sentences)

Sequence

agaggaugaaggcgcugauauuuucuuugguuaucuagcuguaugagugauauuaacaucAUAAAGCUAGGUUACCAAAGUUAacagcacugccguaaugc
...(.((...(((((((...((..(((((((.((((((((.(((((((.......)).))))).)))))))).)))))))..))))))...)))...)).)

Structure
aga g  gaa   ---    aua  uu       u        g     -  ga 
   g au   ggc   gcug   uu  cuuuggu aucuagcu uauga gu  u
   | ||   |||   ||||   ||  ||||||| |||||||| ||||| ||  a
   c ua   ccg   cgac   aA  GAAACCA UGGAUCGA AUAcu ca  u
--- g  aug   uca    ---  UU       U        A     a  au 


Annotation confidence Not enough data
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Genome context
DS885551: 436490-436590 [+]

Database links

Mature isc-miR-79

Accession MIMAT0012705
Description Ixodes scapularis isc-miR-79 mature miRNA
Sequence 61 - AUAAAGCUAGGUUACCAAAGUUA - 83
Evidence not_experimental

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68