Stem-loop sequence bmo-mir-2733e-2

Accession MI0012303
Description Bombyx mori miR-2733e-2 stem-loop
Gene family MIPF0000766; mir-2733
Stem-loop 
uuugcuggacugucuauaaugucuuucaac            -   u    aa    uuc 
                              aauagcuauuac uuc ccag  gaca   a
                              |||||||||||| ||| ||||  ||||   c
                              uuaucgauaaug aag gguc  cugu   a
---------------------uuaaaaccu            u   -    -a    cuu
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Genome context
Coordinates (SILKDB2.0) Overlapping transcripts
nscaf2176: 341036-341134 [-]
intergenic
Clustered miRNAs
< 10kb from bmo-mir-2733e-2
bmo-mir-2733g nscaf2176: 346317-346428 [-]
bmo-mir-2733a-1 nscaf2176: 346147-346230 [-]
bmo-mir-2851-1 nscaf2176: 346140-346238 [+]
bmo-mir-2733b-2 nscaf2176: 345690-345818 [-]
bmo-mir-2733h nscaf2176: 345532-345612 [-]
bmo-mir-2733b-1 nscaf2176: 345409-345488 [-]
bmo-mir-2733a-3 nscaf2176: 345068-345215 [-]
bmo-mir-2851-2 nscaf2176: 345032-345130 [+]
bmo-mir-2733a-2 nscaf2176: 344959-345075 [-]
bmo-mir-2733f nscaf2176: 344550-344667 [-]
bmo-mir-2733i nscaf2176: 343361-343468 [-]
bmo-mir-2733e-1 nscaf2176: 341366-341463 [-]
bmo-mir-2733e-2 nscaf2176: 341036-341134 [-]

Mature sequence bmo-miR-2733e

Accession MIMAT0013617
Sequence

68 -  

ucacugggaauguaauagcuau

 - 89

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Deep sequencing 10 reads, 2 experiments
Evidence experimental; Solexa [1], SOLID [2]

References

1
PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).
2
PMID:20229201 "Novel microRNAs in silkworm (Bombyx mori)" Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J Funct Integr Genomics. 10:405-415(2010).