Stem-loop sequence bmo-mir-9d

Accession

MI0012307

Description

Bombyx mori miR-9d stem-loop

Stem-loop

g       g       ug    uuc    ga     -ug   a 
 cucaauu gaguauu  guga   agcu  uguga   aaa c
 ||||||| |||||||  ||||   ||||  |||||   |||  
 gaguuga cuuguga  cacu   ucga  auacu   uuu u
-       g       gu    uaa    -a     uaa   u 

Deep sequencing

23 reads, 3 experiments

Genome context

• Coordinates (SILKDB2.0): nscaf2176: 353029-353113 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bmo-mir-9d

• bmo-mir-9d: nscaf2176: 353029-353113 [-]
• bmo-mir-2733c: nscaf2176: 352194-352275 [-]
• bmo-mir-2733g: nscaf2176: 346317-346428 [-]
• bmo-mir-2733a-1: nscaf2176: 346147-346230 [-]
• bmo-mir-2851-1: nscaf2176: 346140-346238 [+]
• bmo-mir-2733b-2: nscaf2176: 345690-345818 [-]
• bmo-mir-2733h: nscaf2176: 345532-345612 [-]
• bmo-mir-2733b-1: nscaf2176: 345409-345488 [-]
• bmo-mir-2733a-3: nscaf2176: 345068-345215 [-]
• bmo-mir-2851-2: nscaf2176: 345032-345130 [+]
• bmo-mir-2733a-2: nscaf2176: 344959-345075 [-]
• bmo-mir-2733f: nscaf2176: 344550-344667 [-]
• bmo-mir-2733i: nscaf2176: 343361-343468 [-]

Mature sequence bmo-miR-9d

• Accession: MIMAT0013620
• Sequence: 54 - auaaagcuaauucacugagugu - 75
• Deep sequencing: 8 reads, 2 experiments
• Evidence: experimental; Solexa [1]

References

1. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).