Stem-loop sequence bmo-mir-2778d

Accession MI0012349
Description Bombyx mori miR-2778d stem-loop
Gene family MIPF0000827; mir-2778
Stem-loop 
--    g     -gu        a  uc    ac  uuu 
  cacg caaaa   uuuuuugc ua  cugc  ag   c
  |||| |||||   |||||||| ||  ||||  ||    
  gugc guuuu   aaaaaacg au  gacg  uc   a
ga    a     aac        c  ga    -c  uug
Get sequence
Deep sequencing
203 reads, 3 experiments
Genome context
Coordinates (SILKDB2.0) Overlapping transcripts
scaffold8829: 662-737 [+]
intergenic
Clustered miRNAs
< 10kb from bmo-mir-2778d
bmo-mir-2778a-1 scaffold8829: 58-134 [+]
bmo-mir-2778a-1 scaffold8829: 209-285 [+]
bmo-mir-2778a-1 scaffold8829: 360-436 [+]
bmo-mir-2778a-1 scaffold8829: 511-587 [+]
bmo-mir-2778d scaffold8829: 662-737 [+]

Mature sequence bmo-miR-2778d-5p

Accession MIMAT0013673
Previous IDs bmo-miR-2778d
Sequence

11 -  

guuuuuuugcauauccugca

 - 30

Get sequence
Deep sequencing 13 reads, 2 experiments
Evidence experimental; Solexa [1], SOLID [2]

Mature sequence bmo-miR-2778d-3p

Accession MIMAT0013674
Previous IDs bmo-miR-2778d*
Sequence

46 -  

cagaguacgcaaaaaacaauu

 - 66

Get sequence
Deep sequencing 190 reads, 3 experiments
Evidence experimental; Solexa [1], SOLID [2]

References

1
PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).
2
PMID:20229201 "Novel microRNAs in silkworm (Bombyx mori)" Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J Funct Integr Genomics. 10:405-415(2010).