Stem-loop sequence bmo-mir-2778a-2

Accession MI0012352
Description Bombyx mori miR-2778a-2 stem-loop
Gene family MIPF0000827; mir-2778
Stem-loop 
a      g     --         ua  uc    ac  uuu 
 cucacg caaaa  guuuuuuug  ua  cugc  ag   c
 |||||| |||||  |||||||||  ||  ||||  ||    
 gagugc guuuu  caaaaaaac  au  gacg  uc   a
-      a     aa         gc  ga    -c  uug
Get sequence
Deep sequencing
358 reads, 3 experiments
Genome context
Coordinates (SILKDB2.0) Overlapping transcripts
scaffold18435: 369-448 [-]
intergenic
scaffold19003: 365-444 [-]
intergenic
Clustered miRNAs
< 10kb from bmo-mir-2778a-2
bmo-mir-2778a-4 scaffold18435: 520-596 [-]
bmo-mir-2778a-2 scaffold18435: 369-448 [-]
bmo-mir-2778b scaffold18435: 218-294 [-]
bmo-mir-2778a-1 scaffold18435: 67-143 [-]

Mature sequence bmo-miR-2778a-2-5p

Accession MIMAT0015305
Previous IDs bmo-miR-2778a-2*
Sequence

14 -  

guuuuuuuguauauccugc

 - 32

Get sequence
Deep sequencing 1 reads, 1 experiments
Evidence experimental; Solexa [1]

Mature sequence bmo-miR-2778a-3p

Accession MIMAT0013665
Previous IDs bmo-miR-2778a
Sequence

49 -  

cagaguacgcaaaaaaacaauu

 - 70

Get sequence
Deep sequencing 20206 reads, 3 experiments
Evidence experimental; Solexa [1]

References

1
PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).