Stem-loop sequence bmo-mir-2839

Accession MI0012446
Description Bombyx mori miR-2839 stem-loop
Stem-loop 
----aau               a              a 
       cauaccgucaaacag gcgccagcgcuaug g
       ||||||||||||||| |||||||||||||| c
       guauggcaguuuguc cgcggucgcgauau g
ugccauu               a              c
Get sequence
Deep sequencing
142 reads, 3 experiments
Genome context
Coordinates (SILKDB2.0) Overlapping transcripts
nscaf2828: 5983094-5983168 [+]
intergenic
Clustered miRNAs
< 10kb from bmo-mir-2839
bmo-mir-3421 nscaf2828: 5976304-5976452 [+]
bmo-mir-2839 nscaf2828: 5983094-5983168 [+]

Mature sequence bmo-miR-2839-5p

Accession MIMAT0013754
Previous IDs bmo-miR-2839*
Sequence

11 -  

ucaaacagagcgccagcgcuau

 - 32

Get sequence
Deep sequencing 4 reads, 3 experiments
Evidence experimental; Solexa [1]

Mature sequence bmo-miR-2839-3p

Accession MIMAT0013755
Previous IDs bmo-miR-2839
Sequence

44 -  

cgcuggcgcacuguuugacggu

 - 65

Get sequence
Deep sequencing 135 reads, 3 experiments
Evidence experimental; Solexa [1]

References

1
PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).