Stem-loop sequence bmo-mir-2843-1

Accession

MI0012456

Description

Bombyx mori miR-2843-1 stem-loop

Gene family

MIPF0001044; mir-2843

Stem-loop

-    uug  gucua g   au   -    g u      ga 
 ggcu   ga     a gaa  uag gucg a acauac  a
 ||||   ||     | |||  ||| |||| | ||||||   
 ccga   cu     u cuu  guc cagc u ugugug  u
u    --a  ---ag g   cu   g    g u      au 

Deep sequencing

852 reads, 3 experiments

Genome context

Coordinates (SILKDB2.0)	Overlapping transcripts
scaffold16345: 199-275 [-]	intergenic
scaffold17651: 239-315 [+]	intergenic

Mature sequence bmo-miR-2843-5p

• Accession: MIMAT0013762
• Previous IDs: bmo-miR-2843
• Sequence: 11 - ucuaaggaaauuaggucggauaca - 34
• Deep sequencing: 1448 reads, 3 experiments
• Evidence: experimental; Solexa [1]

Mature sequence bmo-miR-2843-1-3p

• Accession: MIMAT0013763
• Previous IDs: bmo-miR-2843-1*
• Sequence: 49 - uuugcgacgcugucuucgugaucaa - 73
• Deep sequencing: 11 reads, 2 experiments
• Evidence: experimental; Solexa [1]

References

1. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).