miRBase entry: hvt-mir-H1

Stem-loop hvt-mir-H1


Accession
MI0012473
Description
Herpesvirus of turkeys hvt-mir-H1 precursor miRNA


Sequence

cuucgggcaccguucaucucggcgcgccgagcgcgcgcuagcugaucGCGCAGGGAUGUCGGGCGCGCCg
...((.((.(((..((((((.(((((...(((........)))...))))).)))))).))))).))...

Structure
cuu  g  a   uu      g     ccg   gcg 
   cg gc ccg  caucuc gcgcg   agc   c
   || || |||  |||||| |||||   |||    
   GC CG GGC  GUAGGG CGCGc   ucg   g
gCC  G  -   -U      A     uag   auc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hvt-miR-H1

Accession MIMAT0012710
Description Herpesvirus of turkeys hvt-miR-H1 mature miRNA
Sequence 48 - GCGCAGGGAUGUCGGGCGCGCC - 69
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19328516
    MicroRNAs of Gallid and Meleagrid herpesviruses show generally conserved genomic locations and are virus-specific
    "Waidner LA, Morgan RW, Anderson AS, Bernberg EL, Kamboj S, Garcia M, Riblet SM, Ouyang M, Isaacs GK, Markis M, Meyers BC, Green PJ, Burnside J"
    "Virology (2009) 388:128-136