Stem-loop hvt-mir-H5

Accession

MI0012477

Description

Herpesvirus of turkeys hvt-mir-H5 precursor miRNA

Sequence

ccGCUGGUGCCGACGAUCGCCGGGAccggcacuuucgcggcggacgagcuGGUAACCUCUGCGAUCGUUCGGUgaug
........((((((((((((.(((((((((.(.((((...)))).).))))))...))).))))))).)))))....

Structure

ccGCUGGU     -       C   ---      a u    c 
        GCCGA CGAUCGC GGG   Accggc c uucg  
        ||||| ||||||| |||   |||||| | |||| g
        UGGCU GCUAGCG CUC   UGGucg g aggc  
----guag     U       U   CAA      a c    g 

Annotation confidence Not enough data

Genome context

Unknown

Mature hvt-miR-H5-5p

• Accession: MIMAT0012716
• Description: Herpesvirus of turkeys hvt-miR-H5-5p mature miRNA
• Sequence: 3 - GCUGGUGCCGACGAUCGCCGGGA - 25
• Evidence: experimental ; Illumina [1]

Mature hvt-miR-H5-3p

• Accession: MIMAT0012717
• Description: Herpesvirus of turkeys hvt-miR-H5-3p mature miRNA
• Sequence: 51 - GGUAACCUCUGCGAUCGUUCGGU - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19328516
   MicroRNAs of Gallid and Meleagrid herpesviruses show generally conserved genomic locations and are virus-specific
   "Waidner LA, Morgan RW, Anderson AS, Bernberg EL, Kamboj S, Garcia M, Riblet SM, Ouyang M, Isaacs GK, Markis M, Meyers BC, Green PJ, Burnside J"
   "Virology (2009) 388:128-136