miRBase entry: mdo-mir-153-2

Stem-loop mdo-mir-153-2


Accession
MI0012494
Description
Monodelphis domestica mdo-mir-153-2 precursor miRNA
Gene family
MIPF0000050; mir-153


Sequence

12418 reads, 271 reads per million, 5 experiments
agcgguugccggugUCAUUUUUGUGAUGUUGCAGCUaguaauaugagcccagUUGCAUAGUCACAAAAGUGAUCauuggaaacugug
.((((((.(((((((((((((((((((..(((((((.((.......))..)))))))..))))))))))))).)))))).)))))).

Structure
a      g      -             GU       -a  aa 
 gcgguu ccggug UCAUUUUUGUGAU  UGCAGCU  gu  u
 |||||| |||||| |||||||||||||  |||||||  ||  a
 ugucaa gguuaC AGUGAAAACACUG  ACGUUga  cg  u
g      a      U             AU       cc  ag 


Annotation confidence High
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Genome context
chr8: 224496550-224496636 [-]

Database links

Mature mdo-miR-153-3p

Accession MIMAT0012738
Description Monodelphis domestica mdo-miR-153-3p mature miRNA
Sequence 53 - UUGCAUAGUCACAAAAGUGAUC - 74
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature mdo-miR-153-2-5p

Accession MIMAT0026931
Description Monodelphis domestica mdo-miR-153-2-5p mature miRNA
Sequence 15 - UCAUUUUUGUGAUGUUGCAGCU - 36
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45