miRBase entry: mdo-mir-190a

Stem-loop mdo-mir-190a


Accession
MI0012496
Description
Monodelphis domestica mdo-mir-190a precursor miRNA
Gene family
MIPF0000076; mir-190


Sequence

12466 reads, 245 reads per million, 5 experiments
ugcaggccucugugUGAUAUGUUUGAUAUAUUAGGUuguuauuuaauccaaCUAUAUAUCAAACAUAUUCCUacaguguccugcc
.(((((.(.(((((.((((((((((((((((..(((((..........)))))))))))))))))))))..))))).).))))).

Structure
u     c u     -U                UA     uuau 
 gcagg c cugug  GAUAUGUUUGAUAUAU  GGUug    u
 ||||| | |||||  ||||||||||||||||  |||||     
 cgucc g gacaU  UUAUACAAACUAUAUA  UCaac    u
c     u u     CC                --     cuaa 


Annotation confidence High
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Genome context
chr1: 147980881-147980965 [+]

Database links

Mature mdo-miR-190a-5p

Accession MIMAT0012740
Description Monodelphis domestica mdo-miR-190a-5p mature miRNA
Sequence 15 - UGAUAUGUUUGAUAUAUUAGGU - 36
Evidence experimental
Illumina [2]

Mature mdo-miR-190a-3p

Accession MIMAT0026933
Description Monodelphis domestica mdo-miR-190a-3p mature miRNA
Sequence 52 - CUAUAUAUCAAACAUAUUCCU - 72
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45