miRBase entry: mdo-mir-153-1

Stem-loop mdo-mir-153-1


Accession
MI0012505
Description
Monodelphis domestica mdo-mir-153-1 precursor miRNA
Gene family
MIPF0000050; mir-153


Sequence

12331 reads, 266 reads per million, 5 experiments
cucacagcugccagugUCAUUUUUGUGAUCUGCAGCUaguauucuggcuucagUUGCAUAGUCACAAAAGUGAUCauuggcagguguggc
.(((((.((((((((((((((((((((((.((((((((((......)))..)))))))..))))))))))))).))))))))).))))).

Structure
c     g         -             -C       --   au 
 ucaca cugccagug UCAUUUUUGUGAU  UGCAGCU  agu  u
 ||||| ||||||||| |||||||||||||  |||||||  |||   
 ggugu gacgguuaC AGUGAAAACACUG  ACGUUga  ucg  c
c     g         U             AU       cu   gu 


Annotation confidence Not enough data
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Genome context
chr7: 173335344-173335433 [+]

Database links

Mature mdo-miR-153-3p

Accession MIMAT0012738
Description Monodelphis domestica mdo-miR-153-3p mature miRNA
Sequence 54 - UUGCAUAGUCACAAAAGUGAUC - 75
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature mdo-miR-153-1-5p

Accession MIMAT0031108
Description Monodelphis domestica mdo-miR-153-1-5p mature miRNA
Sequence 17 - UCAUUUUUGUGAUCUGCAGCU - 37
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45