Stem-loop mdo-mir-460

Accession

MI0012515

Description

Monodelphis domestica mdo-mir-460 precursor miRNA

Gene family

MIPF0000134; mir-460

Sequence

11180 reads, 191 reads per million, 5 experiments

cugacuuuauagaaCCUGCAUUGUACACACUGUGUGuuuucauucccaugCACAGCGCAUACAAUGUGGAUAcuauaagagucac
.(((((((((((...((((((((((..(.((((((((..........)))))))).)..))))))))))...)))).))))))).

Structure

c       -    aaC          CA A        uuuc 
 ugacuuu auag   CUGCAUUGUA  C CUGUGUGu    a
 ||||||| ||||   ||||||||||  | ||||||||     
 acugaga uauc   GGUGUAACAU  G GACACgua    u
c       a    AUA          AC C        cccu 

Annotation confidence High

Genome context

chr6: 197334847-197334931 [-]

Mature mdo-miR-460-5p

• Accession: MIMAT0012758
• Description: Monodelphis domestica mdo-miR-460-5p mature miRNA
• Sequence: 15 - CCUGCAUUGUACACACUGUGUG - 36
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-460-3p

• Accession: MIMAT0026945
• Description: Monodelphis domestica mdo-miR-460-3p mature miRNA
• Sequence: 51 - CACAGCGCAUACAAUGUGGAUA - 72
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45