miRBase entry: mdo-mir-885

Stem-loop mdo-mir-885


Accession
MI0012524
Description
Monodelphis domestica mdo-mir-885 precursor miRNA
Gene family
MIPF0000532; mir-885


Sequence

12 reads, 1 reads per million, 4 experiments
gauuuugggcaagucaguucaccacugucugccuaagcuuccugagAGGCAGCGUGGUGUAGUGGAUAgagugcuggacucggaguc
((((((((((.(((((.(.((((((.(.((((((............))))))))))))).).))........))).).)))))))))

Structure
         - a   --------  g u      u u      aagcu 
gauuuuggg c agu        ca u caccac g cugccu     u
||||||||| | |||        || | |||||| | ||||||      
cugaggcuc g ucg        GU A GUGGUG C GACGGA     c
         a g   ugagAUAG  G U      - -      gaguc 


Annotation confidence Not enough data
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Genome context
chr4: 183165423-183165509 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mdo-mir-885
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-885

Accession MIMAT0012767
Description Monodelphis domestica mdo-miR-885 mature miRNA
Sequence 47 - AGGCAGCGUGGUGUAGUGGAUA - 68
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39