Stem-loop sequence mmu-mir-432

Accession

MI0012528 (change log)

Symbol

MGI:Mir432

Description

Mus musculus miR-432 stem-loop

Gene family

MIPF0000211; mir-432

Literature search

9 open access papers mention mmu-mir-432
(12 sentences)

Stem-loop

   ug   a    -   --cau    ---u     -  -    c 
5'   ggu gcuc uug     uucc    ggugg gg gcca u
     ||| |||| |||     ||||    ||||| || |||| g
3'   ucg cggg gac     gagg    ucacc cc cggu g
   --   a    u   uagau    uucu     u  u    a 

Deep sequencing

5 reads, 0 reads per million, 3 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr12: 109594956-109595030 [+]
• Overlapping transcripts:

  antisense

  ENSMUST00000149046 ; Rtl1-201; exon 2

Clustered miRNAs

< 10kb from mmu-mir-432

• mmu-mir-337: chr12: 109585789-109585885 [+]
• mmu-mir-3544: chr12: 109585813-109585873 [-]
• mmu-mir-540: chr12: 109586080-109586146 [+]
• mmu-mir-665: chr12: 109586314-109586407 [+]
• mmu-mir-3070-1: chr12: 109587943-109588031 [+]
• mmu-mir-3070-2: chr12: 109588592-109588680 [+]
• mmu-mir-431: chr12: 109590447-109590537 [+]
• mmu-mir-433: chr12: 109591715-109591838 [+]
• mmu-mir-127: chr12: 109592846-109592915 [+]
• mmu-mir-434: chr12: 109594506-109594599 [+]
• mmu-mir-432: chr12: 109594956-109595030 [+]
• mmu-mir-3071: chr12: 109595318-109595397 [-]
• mmu-mir-136: chr12: 109595327-109595388 [+]

Database links

• EntrezGene:Mir432
• MGI:Mir432
• miRBase Tracker:MI0012528

Mature sequence mmu-miR-432

• Accession: MIMAT0012771
• Sequence: 51 - ucuuggaguagaucagugggcag - 73
• Deep sequencing: 1 reads, 1 experiments
• Evidence: by similarity; MI0003133
• Predicted targets:
  • TargetScanVert:mmu-miR-432
  • miRDB:mmu-miR-432
  • microrna.org:mmu-miR-432

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).