miRBase entry: ptr-mir-500-2

Stem-loop ptr-mir-500-2


Accession
MI0012560
Description
Pan troglodytes ptr-mir-500-2 precursor miRNA
Gene family
MIPF0000139; mir-500


Sequence

ucccccucucUAAUCCUUGCUACCUGGGUGAGAgugcuuucugaaugcagugcacccaggcaaggauucugcaaggggg
.((((((..(.(((((((((...(((((((..(.(((.........))).).))))))))))))))))..)..))))))

Structure
u      cu -U         UAC       AG g   uuu 
 cccccu  c  AAUCCUUGC   CUGGGUG  A ugc   c
 ||||||  |  |||||||||   |||||||  | |||   u
 ggggga  g  uuaggaacg   gacccac  u acg   g
-      ac uc         ---       -g g   uaa 


Annotation confidence Not enough data
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Genome context
chrX: 49895431-49895509 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from ptr-mir-500-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-500

Accession MIMAT0008173
Description Pan troglodytes ptr-miR-500 mature miRNA
Sequence 11 - UAAUCCUUGCUACCUGGGUGAGA - 33
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39