miRBase entry: ptr-mir-571-1

Stem-loop ptr-mir-571-1


Accession
MI0012567
Description
Pan troglodytes ptr-mir-571-1 precursor miRNA
Gene family
MIPF0000757; mir-571


Sequence

ccucaguaagaccaagcucagugugccauuuccuugucuguagccaugucuaugggcucuUGAGUUGGCCAUCUGAGCGAGggccugcuuau
....((((.(.((..((((((((.((((.(((...((((((((......))))))))....))).)))))).))))))..)).).))))...

Structure
ccuc    a a  aa      -  u    u   -cuu        cc 
    agua g cc  gcucag ug gcca uuc    gucuguag  a
    |||| | ||  |||||| || |||| |||    ||||||||   
    ucgu c gG  CGAGUC AC CGGU GAG    cggguauc  u
-uau    c g  AG      U  -    U   Uucu        ug 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr4: 480879-480970 [+]

Database links

Mature ptr-miR-571

Accession MIMAT0012805
Description Pan troglodytes ptr-miR-571 mature miRNA
Sequence 61 - UGAGUUGGCCAUCUGAGCGAG - 81
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39