miRBase entry: ptr-mir-589

Stem-loop ptr-mir-589


Accession
MI0012568
Description
Pan troglodytes ptr-mir-589 precursor miRNA
Gene family
MIPF0000496; mir-589


Sequence

uccagccugugcccagcagccccUGAGAACCAUGUCUGCUCUGAGcuggguacugccuguucagaacaaacgccgguucccagacgcugccagcuggcc
.(((((.((......(((((..(((.(((((.(((.((.(((((((.((......)).))))))).)).)))..))))).)))..))))))))))))..

Structure
-u     c  ugccca     cc   A     -A   C  C       u  gu 
  ccagc ug      gcagc  cUG GAACC  UGU UG UCUGAGc gg  a
  ||||| ||      |||||  ||| |||||  ||| || ||||||| ||   
  ggucg ac      cgucg  gac cuugg  gca ac agacuug cc  c
cc     -  ------     ca   c     cc   a  a       u  gu 


Annotation confidence Not enough data
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Genome context
chr7: 4636811-4636909 [-]

Database links

Mature ptr-miR-589

Accession MIMAT0012806
Description Pan troglodytes ptr-miR-589 mature miRNA
Sequence 24 - UGAGAACCAUGUCUGCUCUGAG - 45
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39