miRBase entry: ptr-mir-623

Stem-loop ptr-mir-623


Accession
MI0012573
Description
Pan troglodytes ptr-mir-623 precursor miRNA
Gene family
MIPF0000798; mir-623


Sequence

guacacaguagaagcgUCCCUUGCAGGGGCUGUUGGGUugcauccuaagcugugcuggagcuucccgauguacucuguagaugucuuugcaccuucug
.......(((((.(((((...(((((((..(((((((..((.(((..(((...))))))))..)))))))..)))))))))))).)))))........

Structure
-guacaca     a     CCU       GC       Uu  a   ua   u 
        guaga gcgUC   UGCAGGG  UGUUGGG  gc ucc  agc  
        ||||| |||||   |||||||  |||||||  || |||  ||| g
        cguuu uguag   augucuc  guagccc  cg agg  ucg  
gucuucca     c     ---       au       uu  -   --   u 


Annotation confidence Not enough data
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Genome context
chr13: 85049573-85049670 [+]

Database links

Mature ptr-miR-623

Accession MIMAT0012811
Description Pan troglodytes ptr-miR-623 mature miRNA
Sequence 17 - UCCCUUGCAGGGGCUGUUGGGU - 38
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39