Stem-loop sequence rno-mir-490

Accession

MI0012585 (change log)

Description

Rattus norvegicus miR-490 stem-loop

Gene family

MIPF0000229; mir-490

Literature search

8 open access papers mention rno-mir-490
(29 sentences)

Stem-loop

   uggaaaguucauugu      c      --         g   cac  uua 
5'                ucgaca caugga  ucuccaggu ggu   gu   g
                  |||||| ||||||  ||||||||| |||   ||    
3'                aguugu guaccu  ggaggucca cca   ca   a
   ---------------      c      ca         a   ---  uau 

Deep sequencing

90855 reads, 45.2 reads per million, 420 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr4: 63342943-63343026 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir490
• miRBase Tracker:MI0012585

Mature sequence rno-miR-490-5p

• Accession: MIMAT0017356
• Previous IDs: rno-miR-490*
• Sequence: 22 - ccauggaucuccaggugggu - 41
• Deep sequencing: 2295 reads, 227 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-490-5p
  • miRDB:rno-miR-490-5p

Mature sequence rno-miR-490-3p

• Accession: MIMAT0012823
• Previous IDs: rno-miR-490
• Sequence: 59 - caaccuggaggacuccaugcug - 80
• Deep sequencing: 88559 reads, 420 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-490-3p
  • miRDB:rno-miR-490-3p
  • microrna.org:rno-miR-490-3p

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).