Stem-loop sequence rno-mir-105

Accession

MI0012587 (change log)

Description

Rattus norvegicus miR-105 stem-loop

Gene family

MIPF0000074; mir-105

Literature search

6 open access papers mention rno-mir-105
(82 sentences)

Stem-loop

   ----------   u  a                    g ug 
5'           uag ca gugcucagaugucuguggug c  c
             ||| || |||||||||||||||||||| |  u
3'           auc gu uacgaguuuguaggcacuau g  u
   caucuauggu   -  g                    - ua 

Deep sequencing

12 reads, 0 reads per million, 10 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chrX: 152585531-152585603 [-]
• Overlapping transcripts:

  sense

  ENSRNOT00000040729 ; Gabra3-201; intron 1

Database links

• EntrezGene:Mir105
• miRBase Tracker:MI0012587

Mature sequence rno-miR-105

• Accession: MIMAT0012825
• Sequence: 5 - caagugcucagaugucuguggu - 26
• Deep sequencing: 8 reads, 7 experiments
• Evidence: not experimental
• Predicted targets:
  • TargetScanVert:rno-miR-105
  • miRDB:rno-miR-105
  • microrna.org:rno-miR-105

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).