miRBase entry: rno-mir-1224

Stem-loop rno-mir-1224


Accession
MI0012589
Description
Rattus norvegicus rno-mir-1224 precursor miRNA
Gene family
MIPF0000440; mir-1224

Literature search
6 open access papers mention rno-mir-1224
(20 sentences)

Sequence

12929 reads, 55 reads per million, 214 experiments
GUGAGGACUGGGGAGGUGGAGgguaguaccauuagagccagagcucugucucagcucccucuccccccaccucuucucuccucag
.((((((..((((((((((((((.(((.....((((((....)))))).....)))))))......))))))))))..)))))).

Structure
G      CU          ------    u   accau      c 
 UGAGGA  GGGGAGGUGG      AGgg agu     uagagc a
 ||||||  ||||||||||      |||| |||     ||||||  
 acuccu  cuucuccacc      uccc ucg     gucucg g
g      cu          ccccuc    -   acucu      a 


Annotation confidence High
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Genome context
chr11: 83992628-83992712 [-]

Database links

Mature rno-miR-1224

Accession MIMAT0012827
Description Rattus norvegicus rno-miR-1224 mature miRNA
Sequence 1 - GUGAGGACUGGGGAGGUGGAG - 21
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  2. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39