Stem-loop sequence rno-mir-582

Accession

MI0012595 (change log)

Description

Rattus norvegicus miR-582 stem-loop

Gene family

MIPF0000417; mir-582

Literature search

5 open access papers mention rno-mir-582
(5 sentences)

Stem-loop

   -----         aua            ca     uaaucu 
5'      acucuuugg   caguuguucaac  guuac      a
        |||||||||   ||||||||||||  |||||       
3'      ugggaaacc   gucaacaaguug  caaug      a
   aaacg         caa            uc     uuaauc 

Deep sequencing

180032 reads, 67.8 reads per million, 488 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr2: 40863750-40863830 [+]
• Overlapping transcripts:

  sense

  ENSRNOT00000073552 ; Pde4d-201; intron 1

Database links

• EntrezGene:Mir582
• miRBase Tracker:MI0012595

Mature sequence rno-miR-582-5p

• Accession: MIMAT0012833
• Previous IDs: rno-miR-582
• Sequence: 11 - uacaguuguucaaccaguuacu - 32
• Deep sequencing: 21857 reads, 428 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-582-5p
  • miRDB:rno-miR-582-5p
  • microrna.org:rno-miR-582-5p

Mature sequence rno-miR-582-3p

• Accession: MIMAT0017360
• Previous IDs: rno-miR-582*
• Sequence: 48 - aaccuguugaacaacugaaccc - 69
• Deep sequencing: 158175 reads, 487 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-582-3p
  • miRDB:rno-miR-582-3p

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).