Stem-loop rno-mir-653

Accession

MI0012600

Description

Rattus norvegicus rno-mir-653 precursor miRNA

Gene family

MIPF0000435; mir-653

Literature search

2 open access papers mention rno-mir-653
(13 sentences)

Sequence

25932 reads, 49 reads per million, 312 experiments

auuuuucauucuuucagugUUGAAACAUUCUCUACUGAACcaagcuccaaaacaagUUCACUGGGGUUUGUUUCACUAuugcaagaauugcuaagua
((((..(((((((.(((((.(((((((..(((((.(((((...............))))).)))))..))))))).))))).))))).))..)))).

Structure

-    uu  -     u     U       UU     C     caagcu 
 auuu  ca uucuu cagug UGAAACA  CUCUA UGAAC      c
 ||||  || ||||| ||||| |||||||  ||||| |||||      c
 ugaa  gu aagaa guuAU ACUUUGU  GGGGU ACUUg      a
a    uc  u     c     C       UU     C     aacaaa 

Annotation confidence High

Genome context

chr4: 28658882-28658978 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-653

Mature rno-miR-653-5p

• Accession: MIMAT0012838
• Description: Rattus norvegicus rno-miR-653-5p mature miRNA
• Sequence: 20 - UUGAAACAUUCUCUACUGAAC - 40
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-653-3p

• Accession: MIMAT0017361
• Description: Rattus norvegicus rno-miR-653-3p mature miRNA
• Sequence: 57 - UUCACUGGGGUUUGUUUCACUA - 78
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39